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Sample GSM1505028 Query DataSets for GSM1505028
Status Public on Sep 17, 2014
Title SAT_114
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 49
bmi: 36.33217993
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.732710079
cg00001583 0.062262826
cg00002028 0.091809515
cg00002719 0.095775701
cg00002837 0.320259642
cg00003202 0.041491059
cg00003287 0.276977048
cg00007036 0.933012224
cg00007898 0.057170816
cg00008004 0.090065
cg00008647 0.140647171
cg00009292 0.157514982
cg00011717 0.884525903
cg00014168 0.643406227
cg00015286 0.754504694
cg00016238 0.77969726
cg00017221 0.082945276
cg00017437 0.067790602
cg00021123 0.679183717
cg00021576 0.062061066

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505028_5822791015_R01C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505028_5822791015_R01C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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