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Sample GSM1505027 Query DataSets for GSM1505027
Status Public on Sep 17, 2014
Title SAT_130
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 32
bmi: 49.53513184
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.718314216
cg00001583 0.071461886
cg00002028 0.072143883
cg00002719 0.142742487
cg00002837 0.337247671
cg00003202 0.035632375
cg00003287 0.275868625
cg00007036 0.910707199
cg00007898 0.054536484
cg00008004 0.105651445
cg00008647 0.100980935
cg00009292 0.13898509
cg00011717 0.876338533
cg00014168 0.588470562
cg00015286 0.735138797
cg00016238 0.76624717
cg00017221 0.100606522
cg00017437 0.064168834
cg00021123 0.604823769
cg00021576 0.08511039

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505027_5822791013_R04C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505027_5822791013_R04C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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