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Sample GSM1505026 Query DataSets for GSM1505026
Status Public on Sep 17, 2014
Title SAT_97
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 54
bmi: 43.183391
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.66991886
cg00001583 0.088000612
cg00002028 0.065534822
cg00002719 0.157948335
cg00002837 0.276280769
cg00003202 0.033629914
cg00003287 0.249491516
cg00007036 0.933773184
cg00007898 0.034824724
cg00008004 0.161689855
cg00008647 0.111940238
cg00009292 0.14101133
cg00011717 0.889227275
cg00014168 0.640273391
cg00015286 0.811170733
cg00016238 0.893153837
cg00017221 0.08272276
cg00017437 0.043167532
cg00021123 0.557432766
cg00021576 0.092853762

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505026_5822791013_R01C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505026_5822791013_R01C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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