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Sample GSM1505025 Query DataSets for GSM1505025
Status Public on Sep 17, 2014
Title SAT_106
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 34
bmi: 44.35941043
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.640063503
cg00001583 0.065048295
cg00002028 0.068038674
cg00002719 0.160457042
cg00002837 0.334780738
cg00003202 0.032235889
cg00003287 0.214005033
cg00007036 0.89970753
cg00007898 0.066484503
cg00008004 0.162027512
cg00008647 0.082737781
cg00009292 0.155458099
cg00011717 0.914546607
cg00014168 0.688528101
cg00015286 0.782069834
cg00016238 0.824666196
cg00017221 0.110342344
cg00017437 0.063538802
cg00021123 0.667202132
cg00021576 0.138869444

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505025_5822791012_R05C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505025_5822791012_R05C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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