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Sample GSM1505024 Query DataSets for GSM1505024
Status Public on Sep 17, 2014
Title SAT_93
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 37
bmi: 47.33121945
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.70715771
cg00001583 0.081545707
cg00002028 0.086178029
cg00002719 0.207033158
cg00002837 0.293660276
cg00003202 0.026785824
cg00003287 0.24425853
cg00007036 0.935678447
cg00007898 0.034302732
cg00008004 0.187811803
cg00008647 0.117590485
cg00009292 0.135175184
cg00011717 0.891907458
cg00014168 0.686897441
cg00015286 0.753727104
cg00016238 0.772939296
cg00017221 0.086475926
cg00017437 0.075863114
cg00021123 0.675861143
cg00021576 0.074699649

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505024_5822791012_R03C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505024_5822791012_R03C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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