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Sample GSM1505023 Query DataSets for GSM1505023
Status Public on Sep 17, 2014
Title SAT_63
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 54
bmi: 40.46201814
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.70296101
cg00001583 0.058392755
cg00002028 0.077895321
cg00002719 0.181725452
cg00002837 0.321596278
cg00003202 0.024601938
cg00003287 0.230825838
cg00007036 0.942636552
cg00007898 0.033051966
cg00008004 0.190279156
cg00008647 0.133086581
cg00009292 0.162044758
cg00011717 0.906192771
cg00014168 0.608977317
cg00015286 0.748699155
cg00016238 0.676365353
cg00017221 0.098640005
cg00017437 0.054786728
cg00021123 0.578956515
cg00021576 0.055190406

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505023_5822791012_R02C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505023_5822791012_R02C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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