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Sample GSM1505022 Query DataSets for GSM1505022
Status Public on Sep 17, 2014
Title SAT_87
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 37
bmi: 40.81632653
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.741348427
cg00001583 0.058310711
cg00002028 0.088428076
cg00002719 0.224840954
cg00002837 0.314097982
cg00003202 0.035449555
cg00003287 0.203046993
cg00007036 0.943026205
cg00007898 0.046644982
cg00008004 0.133662152
cg00008647 0.100765688
cg00009292 0.142554158
cg00011717 0.909439366
cg00014168 0.643127183
cg00015286 0.761686436
cg00016238 0.749369281
cg00017221 0.083872607
cg00017437 0.05091676
cg00021123 0.615937202
cg00021576 0.067187065

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505022_5822791011_R04C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505022_5822791011_R04C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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