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Sample GSM1505021 Query DataSets for GSM1505021
Status Public on Sep 17, 2014
Title SAT_77
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 58
bmi: 39.12593137
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.75502615
cg00001583 0.058816371
cg00002028 0.065401748
cg00002719 0.213757867
cg00002837 0.315003785
cg00003202 0.02589131
cg00003287 0.194614707
cg00007036 0.947362542
cg00007898 0.034666344
cg00008004 0.162856286
cg00008647 0.093120648
cg00009292 0.14248816
cg00011717 0.877362301
cg00014168 0.622055139
cg00015286 0.738835457
cg00016238 0.749177424
cg00017221 0.111623711
cg00017437 0.057794267
cg00021123 0.62139298
cg00021576 0.08300207

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505021_5822791011_R03C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505021_5822791011_R03C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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