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Sample GSM1505020 Query DataSets for GSM1505020
Status Public on Sep 17, 2014
Title SAT_98
Sample type genomic
 
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 54
bmi: 38.55193675
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
5822791008_R04C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
 
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
E-mail(s) lude@ludesign.nl
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
 
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
ID_REF
VALUE SWAN Normalized M-value

Data table
ID_REF VALUE
cg00001349 0.676470652
cg00001583 0.070444217
cg00002028 0.064743452
cg00002719 0.111192347
cg00002837 0.306175246
cg00003202 0.0336153
cg00003287 0.227442089
cg00007036 0.912466786
cg00007898 0.047236831
cg00008004 0.138232433
cg00008647 0.085006956
cg00009292 0.141279593
cg00011717 0.906329325
cg00014168 0.652891694
cg00015286 0.709971727
cg00016238 0.819918384
cg00017221 0.086439406
cg00017437 0.073840088
cg00021123 0.666078677
cg00021576 0.086789892

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.




Supplementary file Size Download File type/resource
GSM1505020_5822791008_R04C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505020_5822791008_R04C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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