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Sample GSM1505019 Query DataSets for GSM1505019
Status Public on Sep 17, 2014
Title SAT_70
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 41
bmi: 38.75432526
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.751510898
cg00001583 0.079587437
cg00002028 0.07359405
cg00002719 0.15491209
cg00002837 0.345760934
cg00003202 0.029118279
cg00003287 0.246376014
cg00007036 0.929679295
cg00007898 0.047000631
cg00008004 0.10929463
cg00008647 0.105766089
cg00009292 0.135555241
cg00011717 0.914506594
cg00014168 0.58351983
cg00015286 0.761806405
cg00016238 0.739270482
cg00017221 0.086877144
cg00017437 0.065458532
cg00021123 0.629142726
cg00021576 0.090825364

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505019_5822791003_R04C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505019_5822791003_R04C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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