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Sample GSM1505017 Query DataSets for GSM1505017
Status Public on Sep 17, 2014
Title SAT_37
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 38
bmi: 45.08943235
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.708436339
cg00001583 0.073766838
cg00002028 0.068232532
cg00002719 0.16565588
cg00002837 0.312992333
cg00003202 0.029372664
cg00003287 0.317977248
cg00007036 0.945703864
cg00007898 0.056405065
cg00008004 0.117566362
cg00008647 0.09452711
cg00009292 0.157256275
cg00011717 0.879246916
cg00014168 0.717557888
cg00015286 0.727954007
cg00016238 0.807125866
cg00017221 0.100115576
cg00017437 0.061947968
cg00021123 0.708912867
cg00021576 0.084056114

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505017_5822791002_R05C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505017_5822791002_R05C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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