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Sample GSM1505016 Query DataSets for GSM1505016
Status Public on Sep 17, 2014
Title SAT_107
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 62
bmi: 40.64450573
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.7147284
cg00001583 0.071108089
cg00002028 0.088739762
cg00002719 0.103720289
cg00002837 0.261928371
cg00003202 0.020640421
cg00003287 0.211955602
cg00007036 0.945766055
cg00007898 0.041199969
cg00008004 0.138946111
cg00008647 0.091686053
cg00009292 0.149026651
cg00011717 0.904593635
cg00014168 0.604051174
cg00015286 0.737637412
cg00016238 0.755843665
cg00017221 0.114795136
cg00017437 0.083055312
cg00021123 0.448753395
cg00021576 0.089047335

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505016_5822791002_R04C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505016_5822791002_R04C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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