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Sample GSM1505015 Query DataSets for GSM1505015
Status Public on Sep 17, 2014
Title SAT_73
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 42
bmi: 50.05833867
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.660933903
cg00001583 0.070051693
cg00002028 0.081539291
cg00002719 0.13860014
cg00002837 0.378533728
cg00003202 0.034560152
cg00003287 0.237931906
cg00007036 0.933581551
cg00007898 0.058337977
cg00008004 0.157112523
cg00008647 0.09001191
cg00009292 0.148871453
cg00011717 0.899560006
cg00014168 0.662949499
cg00015286 0.6849211
cg00016238 0.779038595
cg00017221 0.077483573
cg00017437 0.093316732
cg00021123 0.672909387
cg00021576 0.100516457

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505015_5822791002_R01C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505015_5822791002_R01C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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