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Sample GSM1505014 Query DataSets for GSM1505014
Status Public on Sep 17, 2014
Title SAT_102
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 41
bmi: 50.36476298
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.711909239
cg00001583 0.053099499
cg00002028 0.079146148
cg00002719 0.056566504
cg00002837 0.333188497
cg00003202 0.03327179
cg00003287 0.210870547
cg00007036 0.931267161
cg00007898 0.037153886
cg00008004 0.135260881
cg00008647 0.113492457
cg00009292 0.139970974
cg00011717 0.910729992
cg00014168 0.611781517
cg00015286 0.668183957
cg00016238 0.740440432
cg00017221 0.109607767
cg00017437 0.072291602
cg00021123 0.631704187
cg00021576 0.092911741

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505014_5822791001_R05C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505014_5822791001_R05C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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