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Sample GSM1505013 Query DataSets for GSM1505013
Status Public on Sep 17, 2014
Title SAT_48
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 33
bmi: 42.58786848
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.804756157
cg00001583 0.062067957
cg00002028 0.058009516
cg00002719 0.142985066
cg00002837 0.299988076
cg00003202 0.032659941
cg00003287 0.243134624
cg00007036 0.915209469
cg00007898 0.057495428
cg00008004 0.114308873
cg00008647 0.123116374
cg00009292 0.138604917
cg00011717 0.907409519
cg00014168 0.671290769
cg00015286 0.744329881
cg00016238 0.844510322
cg00017221 0.076371099
cg00017437 0.063833661
cg00021123 0.699831021
cg00021576 0.080961583

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505013_5822791001_R03C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505013_5822791001_R03C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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