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Sample GSM1504982 Query DataSets for GSM1504982
Status Public on Sep 17, 2014
Title Liver_130
Sample type genomic
Source name severely obese patient_liver
Organism Homo sapiens
Characteristics subject status: severely obese patient
subject age: 32
gender: female
bmi: 49.535
tissue: liver
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description Liver sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61446 Epigenome analysis of the human liver
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.757399345
cg00001583 0.069488308
cg00002028 0.074639792
cg00002719 0.467386972
cg00002837 0.442612514
cg00003202 0.050322649
cg00003287 0.166882576
cg00007036 0.961063402
cg00007898 0.05414523
cg00008004 0.160026669
cg00008647 0.074615876
cg00009292 0.118188738
cg00011717 0.917102719
cg00014168 0.562554688
cg00015286 0.755426728
cg00016238 0.674431868
cg00017221 0.088438668
cg00017437 0.065376321
cg00021123 0.881231011
cg00021576 0.087405775

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1504982_5822943014_R02C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1504982_5822943014_R02C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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