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Sample GSM1504981 Query DataSets for GSM1504981
Status Public on Sep 17, 2014
Title Liver_41
Sample type genomic
Source name severely obese patient_liver
Organism Homo sapiens
Characteristics subject status: severely obese patient
subject age: 36
gender: female
bmi: 46.168
tissue: liver
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description Liver sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61446 Epigenome analysis of the human liver
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.816458655
cg00001583 0.052740245
cg00002028 0.064656522
cg00002719 0.418233915
cg00002837 0.565882171
cg00003202 0.051597724
cg00003287 0.166026838
cg00007036 0.94563651
cg00007898 0.044796134
cg00008004 0.206573226
cg00008647 0.061292472
cg00009292 0.102481632
cg00011717 0.915762309
cg00014168 0.631967464
cg00015286 0.784622465
cg00016238 0.804318487
cg00017221 0.12966809
cg00017437 0.107930868
cg00021123 0.846470209
cg00021576 0.096116751

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1504981_5822943013_R06C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1504981_5822943013_R06C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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