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Sample GSM1504964 Query DataSets for GSM1504964
Status Public on Sep 17, 2014
Title Liver_99
Sample type genomic
Source name severely obese patient_liver
Organism Homo sapiens
Characteristics subject status: severely obese patient
subject age: 49
gender: male
bmi: 44.607
tissue: liver
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description Liver sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61446 Epigenome analysis of the human liver
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.797418459
cg00001583 0.061577676
cg00002028 0.055431573
cg00002719 0.069577539
cg00002837 0.378070897
cg00003202 0.019516148
cg00003287 0.206171478
cg00007036 0.957578096
cg00007898 0.077602721
cg00008004 0.11080025
cg00008647 0.191527871
cg00009292 0.169837923
cg00011717 0.923842674
cg00014168 0.466999966
cg00015286 0.722585581
cg00016238 0.851798357
cg00017221 0.084005535
cg00017437 0.162313327
cg00021123 0.785805003
cg00021576 0.062211796

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1504964_5822791028_R01C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1504964_5822791028_R01C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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