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Sample GSM1504944 Query DataSets for GSM1504944
Status Public on Sep 17, 2014
Title Liver_124
Sample type genomic
Source name severely obese patient_liver
Organism Homo sapiens
Characteristics subject status: severely obese patient
subject age: 42
gender: male
bmi: 71.121
tissue: liver
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description Liver sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61446 Epigenome analysis of the human liver
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.690597216
cg00001583 0.044649147
cg00002028 0.07153701
cg00002719 0.197416992
cg00002837 0.485492242
cg00003202 0.029015218
cg00003287 0.198136985
cg00007036 0.936616679
cg00007898 0.043863966
cg00008004 0.145230827
cg00008647 0.204241947
cg00009292 0.1323327
cg00011717 0.905936435
cg00014168 0.54320094
cg00015286 0.760835536
cg00016238 0.783266513
cg00017221 0.1014537
cg00017437 0.097459167
cg00021123 0.827378989
cg00021576 0.104227983

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1504944_5822791012_R02C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1504944_5822791012_R02C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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