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Sample GSM1504932 Query DataSets for GSM1504932
Status Public on Sep 17, 2014
Title Liver_91
Sample type genomic
Source name severely obese patient_liver
Organism Homo sapiens
Characteristics subject status: severely obese patient
subject age: 38
gender: female
bmi: 53.560
tissue: liver
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description Liver sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61446 Epigenome analysis of the human liver
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.78018861
cg00001583 0.041476965
cg00002028 0.081254586
cg00002719 0.174400284
cg00002837 0.422958713
cg00003202 0.015935337
cg00003287 0.207310848
cg00007036 0.928414771
cg00007898 0.04678402
cg00008004 0.113970285
cg00008647 0.143742131
cg00009292 0.125293173
cg00011717 0.900188141
cg00014168 0.471598324
cg00015286 0.733487625
cg00016238 0.83234109
cg00017221 0.115242597
cg00017437 0.065980445
cg00021123 0.842976827
cg00021576 0.071295154

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1504932_5822791002_R02C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1504932_5822791002_R02C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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