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Sample GSM1504931 Query DataSets for GSM1504931
Status Public on Sep 17, 2014
Title Liver_71
Sample type genomic
Source name severely obese patient_liver
Organism Homo sapiens
Characteristics subject status: severely obese patient
subject age: 41
gender: female
bmi: 45.867
tissue: liver
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description Liver sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61446 Epigenome analysis of the human liver
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.716876119
cg00001583 0.071479842
cg00002028 0.07567535
cg00002719 0.153365944
cg00002837 0.44310385
cg00003202 0.043932
cg00003287 0.20682232
cg00007036 0.931278379
cg00007898 0.045032133
cg00008004 0.132768763
cg00008647 0.206179332
cg00009292 0.152055947
cg00011717 0.915752395
cg00014168 0.475918718
cg00015286 0.736157647
cg00016238 0.824538138
cg00017221 0.069979773
cg00017437 0.122645199
cg00021123 0.872892911
cg00021576 0.093347751

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1504931_5822791001_R04C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1504931_5822791001_R04C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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