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GEO accession:
Sample GSM1502722
Query DataSets for GSM1502722
Status
Public on Sep 11, 2014
Title
Hutt60_LCL
Sample type
genomic
Source name
LCL
Organism
Homo sapiens
Characteristics
cell type (precursor used to generate ipscs): LCL
passage: n/a
gender: Female
Treatment protocol
n/a
Growth protocol
n/a
Extracted molecule
genomic DNA
Extraction protocol
DNeasy Blood and Tissue Kits (Qiagen)
Label
Cy3, Cy5
Label protocol
Bisulfite conversion
Hybridization protocol
As directed by manufacturer
Scan protocol
As directed by manufacturer
Description
Sample_28
Data processing
Quantile normalization followed by BQMI normalization
Submission date
Sep 11, 2014
Last update date
Sep 11, 2014
Contact name
Irene Gallego Romero
E-mail(s)
ireneg@uchicago.edu
Phone
773 834 1984
Organization name
University of Chicago
Department
Human Genetics
Lab
Gilad
Street address
920 E 58th St, CLSC 317
City
Chicago
State/province
IL
ZIP/Postal code
60637
Country
USA
Platform ID
GPL13534
Series (2)
GSE61342
Generation of a Panel of Induced Pluripotent Stem Cells From Chimpanzees: a Resource for Comparative Functional Genomics (methylation array)
GSE61343
Generation of a Panel of Induced Pluripotent Stem Cells From Chimpanzees: a Resource for Comparative Functional Genomics
Data table header descriptions
ID_REF
VALUE
normalized Average Beta (Quantile normalization followed by BQMI normalization)
Detection_Pval
Data table
ID_REF
VALUE
Detection_Pval
cg00000108
0.916680822150501
0
cg00000165
0.13803334275219
0
cg00000236
0.874697735766102
0
cg00000289
0.516694293156524
0
cg00000292
0.842507332378419
0
cg00000321
0.340180495689655
0
cg00000363
0.450652694340304
0
cg00000622
0.0236318407960199
0
cg00000714
0.189419370881512
0
cg00000721
0.869171974522293
0
cg00000734
0.0917329093799682
0
cg00000769
0.060357531876722
0
cg00000807
0.710082602401431
0
cg00000905
0.1104
0
cg00000924
0.372992213570634
0
cg00001099
0.455384437907366
0
cg00001245
0.0500311859574089
0
cg00001249
0.610025488530161
0
cg00001261
0.676651511099224
0
cg00001349
0.852722879088634
0
Total number of rows:
335307
Table truncated, full table size
10213 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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