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Sample GSM1502708 Query DataSets for GSM1502708
Status Public on Sep 11, 2014
Title Hutt60_iPSC
Sample type genomic
 
Source name induced pluripotent stem cell line
Organism Homo sapiens
Characteristics cell line: induced pluripotent stem cell line
passage: 13+4
gender: Female
Treatment protocol n/a
Growth protocol n/a
Extracted molecule genomic DNA
Extraction protocol DNeasy Blood and Tissue Kits (Qiagen)
Label Cy3, Cy5
Label protocol Bisulfite conversion
 
Hybridization protocol As directed by manufacturer
Scan protocol As directed by manufacturer
Description Sample_14
Data processing Quantile normalization followed by BQMI normalization
 
Submission date Sep 11, 2014
Last update date Sep 11, 2014
Contact name Irene Gallego Romero
E-mail(s) ireneg@uchicago.edu
Phone 773 834 1984
Organization name University of Chicago
Department Human Genetics
Lab Gilad
Street address 920 E 58th St, CLSC 317
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
 
Platform ID GPL13534
Series (2)
GSE61342 Generation of a Panel of Induced Pluripotent Stem Cells From Chimpanzees: a Resource for Comparative Functional Genomics (methylation array)
GSE61343 Generation of a Panel of Induced Pluripotent Stem Cells From Chimpanzees: a Resource for Comparative Functional Genomics

Data table header descriptions
ID_REF
VALUE normalized Average Beta (Quantile normalization followed by BQMI normalization)
Detection_Pval

Data table
ID_REF VALUE Detection_Pval
cg00000108 0.918498444243702 0
cg00000165 0.138211382113821 0
cg00000236 0.812509922209875 0
cg00000289 0.633925198337741 0
cg00000292 0.830421146953405 0
cg00000321 0.236874870305043 0
cg00000363 0.116977306402558 0
cg00000622 0.0235804979937339 0
cg00000714 0.284205270031497 0
cg00000721 0.853699317263481 0
cg00000734 0.0841968911917098 0
cg00000769 0.0665078141425468 0
cg00000807 0.775861136646299 0
cg00000905 0.147795893719807 0
cg00000924 0.474218458089426 0
cg00001099 0.0937334041423261 0
cg00001245 0.0363579474342929 0
cg00001249 0.803134726545131 0
cg00001261 0.809428359317001 0
cg00001349 0.810597570269422 0

Total number of rows: 335307

Table truncated, full table size 10208 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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