|
Status |
Public on Nov 03, 2014 |
Title |
Human liver expression data from subject S11a17b02 |
Sample type |
RNA |
|
|
Source name |
liver tissue
|
Organism |
Homo sapiens |
Characteristics |
subjectid: S11a17b02 Sex: female age: 46 bmi: 24.4 diseasestatus: PSC
|
Treatment protocol |
not applicable
|
Growth protocol |
liver biopsy
|
Extracted molecule |
total RNA |
Extraction protocol |
For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1,4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
|
Label |
biotin
|
Label protocol |
labelled by biotin according to the manufacturers protocols
|
|
|
Hybridization protocol |
according to the manufacturers protocols
|
Scan protocol |
according to the manufacturers protocols
|
Description |
Gene expression data from human liver tissue
|
Data processing |
RMA normalization with Bioconductor package oligo Reported values are log2 RMA normalized gene level expression values from Bioconductor package oligo
|
|
|
Submission date |
Sep 09, 2014 |
Last update date |
Nov 04, 2014 |
Contact name |
Steve Horvath |
E-mail(s) |
shorvath@altoslabs.com
|
Organization name |
University of California, Los Angeles
|
Department |
Human Genetics
|
Lab |
Horvath
|
Street address |
695 Charles E. Young Drive South, Box 708822
|
City |
Los Angeles |
State/province |
CA |
ZIP/Postal code |
90095-7088 |
Country |
USA |
|
|
Platform ID |
GPL11532 |
Series (2) |
GSE61256 |
Obesity accelerates epigenetic aging of human liver |
GSE61260 |
Human liver gene expression data from subjects of varying ages |
|