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Sample GSM1501012 Query DataSets for GSM1501012
Status Public on Nov 03, 2014
Title genomic DNA from human muscle of subject S11a16122
Sample type genomic
Source name Muscle
Organism Homo sapiens
Characteristics subjectid: S11a16122
Sex: female
dna.extraction.method: AllPrep
age: 37
dnamage: 38.52818734
ageaccelerationresidual: -0.963858823357315
bmi: 53.6
diseasestatus: NAFLD
nafldactivityscore: 1
liversteatosis: 1
liverinflammation: 0
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human muscle tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61259 Human muscle Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3479561
cg00000108 0.873701
cg00000109 0.6174402
cg00000165 0.1668643
cg00000236 0.5009642
cg00000289 0.5114713
cg00000292 0.4887522
cg00000321 0.2732398
cg00000363 0.2874589
cg00000622 0.02860715
cg00000658 0.7958544
cg00000714 0.1521295
cg00000721 0.8743599
cg00000734 0.07438055
cg00000769 0.04103311
cg00000807 0.6435946
cg00000884 0.8055071
cg00000905 0.08507294
cg00000924 0.4716944
cg00000948 0.8646556

Total number of rows: 485577

Table truncated, full table size 10049 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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