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Sample GSM1501011 Query DataSets for GSM1501011
Status Public on Nov 03, 2014
Title genomic DNA from human muscle of subject S11a15d72
Sample type genomic
Source name Muscle
Organism Homo sapiens
Characteristics subjectid: S11a15d72
Sex: female
dna.extraction.method: AllPrep
age: 36
dnamage: 38.20420914
ageaccelerationresidual: -0.529448002243525
bmi: 47.8
diseasestatus: NASH
nafldactivityscore: 5
liversteatosis: 3
liverinflammation: 1
fibrosis: 1
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human muscle tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61259 Human muscle Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3120123
cg00000108 0.8766508
cg00000109 0.7004921
cg00000165 0.170739
cg00000236 0.5622166
cg00000289 0.5074298
cg00000292 0.5233511
cg00000321 0.2597432
cg00000363 0.2599623
cg00000622 0.02596524
cg00000658 0.7371041
cg00000714 0.1252211
cg00000721 0.8582296
cg00000734 0.07736
cg00000769 0.05305611
cg00000807 0.6251135
cg00000884 0.7736595
cg00000905 0.08009006
cg00000924 0.5292612
cg00000948 0.8384554

Total number of rows: 485577

Table truncated, full table size 10042 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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