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Sample GSM1501008 Query DataSets for GSM1501008
Status Public on Nov 03, 2014
Title genomic DNA from human muscle of subject S11a15c62
Sample type genomic
Source name Muscle
Organism Homo sapiens
Characteristics subjectid: S11a15c62
Sex: male
dna.extraction.method: AllPrep
age: 32
dnamage: 38.96431048
ageaccelerationresidual: 3.26420942221163
bmi: 57.5
diseasestatus: NAFLD
nafldactivityscore: 4
liversteatosis: 3
liverinflammation: 0
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human muscle tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61259 Human muscle Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3301876
cg00000108 0.8969554
cg00000109 0.6766474
cg00000165 0.1687889
cg00000236 0.5274317
cg00000289 0.5429127
cg00000292 0.4860248
cg00000321 0.235711
cg00000363 0.277152
cg00000622 0.02546979
cg00000658 0.7480751
cg00000714 0.1410906
cg00000721 0.840611
cg00000734 0.08518385
cg00000769 0.05140181
cg00000807 0.6079932
cg00000884 0.79386
cg00000905 0.07288206
cg00000924 0.4766662
cg00000948 0.8227735

Total number of rows: 485577

Table truncated, full table size 10043 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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