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Sample GSM1501007 Query DataSets for GSM1501007
Status Public on Nov 03, 2014
Title genomic DNA from human muscle of subject S11a15b12
Sample type genomic
Source name Muscle
Organism Homo sapiens
Characteristics subjectid: S11a15b12
Sex: female
dna.extraction.method: AllPrep
age: 31
dnamage: 38.29863387
ageaccelerationresidual: 3.35692183332542
bmi: 54.1
diseasestatus: HealthyObese
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human muscle tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61259 Human muscle Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3296804
cg00000108 0.8393883
cg00000109 0.5388981
cg00000165 0.146574
cg00000236 0.4915162
cg00000289 0.4840007
cg00000292 0.5388642
cg00000321 0.2571706
cg00000363 0.2847813
cg00000622 0.03146071
cg00000658 0.7639235
cg00000714 0.1149361
cg00000721 0.8922724
cg00000734 0.07570962
cg00000769 0.05126509
cg00000807 0.6097308
cg00000884 0.7612737
cg00000905 0.07143787
cg00000924 0.4033424
cg00000948 0.8555813

Total number of rows: 485577

Table truncated, full table size 10044 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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