NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1501006 Query DataSets for GSM1501006
Status Public on Nov 03, 2014
Title genomic DNA from human muscle of subject S11a15a92
Sample type genomic
 
Source name Muscle
Organism Homo sapiens
Characteristics subjectid: S11a15a92
Sex: female
dna.extraction.method: AllPrep
age: 39
dnamage: 28.9156489
ageaccelerationresidual: -12.0931753055849
bmi: 44.6
diseasestatus: HealthyObese
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human muscle tissue
Data processing BeadStudio software v3.2.
 
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61259 Human muscle Illumina Inf 450 DNA methylation data

Data table header descriptions
ID_REF
VALUE Average Beta (no special processing)

Data table
ID_REF VALUE
cg00000029 0.3182744
cg00000108 0.8763806
cg00000109 0.6359711
cg00000165 0.1875802
cg00000236 0.4708622
cg00000289 0.5248067
cg00000292 0.5135201
cg00000321 0.2624476
cg00000363 0.2455109
cg00000622 0.03125867
cg00000658 0.8031229
cg00000714 0.1224015
cg00000721 0.8621979
cg00000734 0.06353901
cg00000769 0.05133808
cg00000807 0.6242325
cg00000884 0.7455289
cg00000905 0.07733854
cg00000924 0.4799489
cg00000948 0.8279598

Total number of rows: 485577

Table truncated, full table size 10047 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap