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Sample GSM1501005 Query DataSets for GSM1501005
Status Public on Nov 03, 2014
Title genomic DNA from human muscle of subject S11a15a62
Sample type genomic
 
Source name Muscle
Organism Homo sapiens
Characteristics subjectid: S11a15a62
Sex: female
dna.extraction.method: AllPrep
age: 33
dnamage: 21.55547476
ageaccelerationresidual: -14.9030153189022
bmi: 53.8
diseasestatus: NASH
nafldactivityscore: 7
liversteatosis: 3
liverinflammation: 3
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human muscle tissue
Data processing BeadStudio software v3.2.
 
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61259 Human muscle Illumina Inf 450 DNA methylation data

Data table header descriptions
ID_REF
VALUE Average Beta (no special processing)

Data table
ID_REF VALUE
cg00000029 0.3543872
cg00000108 0.879384
cg00000109 0.6447219
cg00000165 0.1735303
cg00000236 0.4913221
cg00000289 0.6475027
cg00000292 0.5051107
cg00000321 0.2710025
cg00000363 0.3583984
cg00000622 0.03135717
cg00000658 0.780048
cg00000714 0.1510443
cg00000721 0.8594964
cg00000734 0.08591868
cg00000769 0.05865803
cg00000807 0.6067155
cg00000884 0.8142328
cg00000905 0.07323255
cg00000924 0.4954016
cg00000948 0.858023

Total number of rows: 485577

Table truncated, full table size 10042 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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