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Sample GSM1501004 Query DataSets for GSM1501004
Status Public on Nov 03, 2014
Title genomic DNA from human muscle of subject S11a15972
Sample type genomic
Source name Muscle
Organism Homo sapiens
Characteristics subjectid: S11a15972
Sex: female
dna.extraction.method: AllPrep
age: 42
dnamage: 47.81749
ageaccelerationresidual: 4.53349873107373
bmi: 70.2
diseasestatus: NASH
nafldactivityscore: 5
liversteatosis: 3
liverinflammation: 2
fibrosis: 3
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human muscle tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61259 Human muscle Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3079703
cg00000108 0.8523824
cg00000109 0.6285126
cg00000165 0.1819136
cg00000236 0.5490289
cg00000289 0.5467705
cg00000292 0.4381376
cg00000321 0.2965679
cg00000363 0.3491849
cg00000622 0.04587588
cg00000658 0.7500377
cg00000714 0.1251517
cg00000721 0.8685356
cg00000734 0.07638395
cg00000769 0.05585761
cg00000807 0.558293
cg00000884 0.7723217
cg00000905 0.06731296
cg00000924 0.4981814
cg00000948 0.8655906

Total number of rows: 485577

Table truncated, full table size 10038 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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