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Sample GSM1501001 Query DataSets for GSM1501001
Status Public on Nov 03, 2014
Title genomic DNA from human muscle of subject S11a154c2
Sample type genomic
Source name Muscle
Organism Homo sapiens
Characteristics subjectid: S11a154c2
Sex: female
dna.extraction.method: AllPrep
age: 32
dnamage: 38.31728027
ageaccelerationresidual: 2.61717921221163
bmi: 47.3
diseasestatus: NASH
nafldactivityscore: 5
liversteatosis: 3
liverinflammation: 1
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human muscle tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61259 Human muscle Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3382936
cg00000108 0.8539753
cg00000109 0.6386672
cg00000165 0.1830687
cg00000236 0.4311082
cg00000289 0.4467006
cg00000292 0.4819938
cg00000321 0.2515192
cg00000363 0.2910269
cg00000622 0.03133947
cg00000658 0.750877
cg00000714 0.1341459
cg00000721 0.8349137
cg00000734 0.07901579
cg00000769 0.04427996
cg00000807 0.5730895
cg00000884 0.7724211
cg00000905 0.08205789
cg00000924 0.460875
cg00000948 0.8235739

Total number of rows: 485577

Table truncated, full table size 10050 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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