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Sample GSM1501000 Query DataSets for GSM1501000
Status Public on Nov 03, 2014
Title genomic DNA from human muscle of subject S11a15412
Sample type genomic
Source name Muscle
Organism Homo sapiens
Characteristics subjectid: S11a15412
Sex: female
dna.extraction.method: AllPrep
age: 45
dnamage: 49.64844505
ageaccelerationresidual: 4.08928671773236
bmi: 54.3
diseasestatus: HealthyObese
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human muscle tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61259 Human muscle Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3445504
cg00000108 0.8771811
cg00000109 0.6646906
cg00000165 0.1286232
cg00000236 0.4751977
cg00000289 0.4251825
cg00000292 0.4925046
cg00000321 0.2945526
cg00000363 0.2722065
cg00000622 0.0306467
cg00000658 0.7965897
cg00000714 0.1057108
cg00000721 0.8591201
cg00000734 0.08112207
cg00000769 0.0397411
cg00000807 0.6369747
cg00000884 0.7868955
cg00000905 0.08008853
cg00000924 0.501819
cg00000948 0.8808242

Total number of rows: 485577

Table truncated, full table size 10048 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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