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Sample GSM1500994 Query DataSets for GSM1500994
Status Public on Nov 03, 2014
Title genomic DNA from human muscle of subject S11a14d82
Sample type genomic
Source name Muscle
Organism Homo sapiens
Characteristics subjectid: S11a14d82
Sex: female
dna.extraction.method: AllPrep
age: 51
dnamage: 48.13258675
ageaccelerationresidual: -1.97690570895038
bmi: 41.8
diseasestatus: NASH
nafldactivityscore: 6
liversteatosis: 3
liverinflammation: 3
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human muscle tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61259 Human muscle Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3405009
cg00000108 0.8795099
cg00000109 0.6322799
cg00000165 0.1715985
cg00000236 0.5742771
cg00000289 0.5621442
cg00000292 0.511498
cg00000321 0.2974878
cg00000363 0.257029
cg00000622 0.02635309
cg00000658 0.8018078
cg00000714 0.1222022
cg00000721 0.8782136
cg00000734 0.07879566
cg00000769 0.03784945
cg00000807 0.6413799
cg00000884 0.7777619
cg00000905 0.07173878
cg00000924 0.4774466
cg00000948 0.863431

Total number of rows: 485577

Table truncated, full table size 10045 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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