GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1500993 Query DataSets for GSM1500993
Status Public on Nov 03, 2014
Title genomic DNA from human muscle of subject S11a14cf2
Sample type genomic
Source name Muscle
Organism Homo sapiens
Characteristics subjectid: S11a14cf2
Sex: female
dna.extraction.method: AllPrep
age: 46
dnamage: 42.36429609
ageaccelerationresidual: -3.95325126338143
bmi: 43.5
diseasestatus: NAFLD
nafldactivityscore: 3
liversteatosis: 3
liverinflammation: 0
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human muscle tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61259 Human muscle Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3833949
cg00000108 0.888393
cg00000109 0.6957632
cg00000165 0.1720275
cg00000236 0.5231078
cg00000289 0.5529655
cg00000292 0.548112
cg00000321 0.2780864
cg00000363 0.3161474
cg00000622 0.02877236
cg00000658 0.7540626
cg00000714 0.1354043
cg00000721 0.8783684
cg00000734 0.07445357
cg00000769 0.04650454
cg00000807 0.6414641
cg00000884 0.740077
cg00000905 0.06461562
cg00000924 0.5021791
cg00000948 0.8626058

Total number of rows: 485577

Table truncated, full table size 10044 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap