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Sample GSM1500992 Query DataSets for GSM1500992
Status Public on Nov 03, 2014
Title genomic DNA from human muscle of subject S11a14be2
Sample type genomic
Source name Muscle
Organism Homo sapiens
Characteristics subjectid: S11a14be2
Sex: female
dna.extraction.method: AllPrep
age: 44
dnamage: 50.26631073
ageaccelerationresidual: 5.46554141884615
bmi: 48
diseasestatus: HealthyObese
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human muscle tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61259 Human muscle Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2934228
cg00000108 0.8481133
cg00000109 0.5547158
cg00000165 0.1099839
cg00000236 0.4837003
cg00000289 0.4430324
cg00000292 0.3908074
cg00000321 0.165963
cg00000363 0.2052243
cg00000622 0.03440165
cg00000658 0.7317793
cg00000714 0.08787341
cg00000721 0.8741849
cg00000734 0.07277846
cg00000769 0.04596792
cg00000807 0.575834
cg00000884 0.7576022
cg00000905 0.07883903
cg00000924 0.4925644
cg00000948 0.850725

Total number of rows: 485577

Table truncated, full table size 10052 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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