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Sample GSM1500990 Query DataSets for GSM1500990
Status Public on Nov 03, 2014
Title genomic DNA from human muscle of subject S11a149c2
Sample type genomic
Source name Muscle
Organism Homo sapiens
Characteristics subjectid: S11a149c2
Sex: female
dna.extraction.method: AllPrep
age: 48
dnamage: 41.8679475
ageaccelerationresidual: -5.96637789560901
bmi: 49.6
diseasestatus: HealthyObese
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human muscle tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61259 Human muscle Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.4353929
cg00000108 0.9113094
cg00000109 0.8000351
cg00000165 0.1744529
cg00000236 0.6616055
cg00000289 0.5525586
cg00000292 0.7623365
cg00000321 0.2843893
cg00000363 0.331841
cg00000622 0.03620816
cg00000658 0.7801588
cg00000714 0.1408867
cg00000721 0.8633267
cg00000734 0.07303371
cg00000769 0.05081098
cg00000807 0.805555
cg00000884 0.753344
cg00000905 0.07595927
cg00000924 0.4849259
cg00000948 0.8382132

Total number of rows: 485577

Table truncated, full table size 10047 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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