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Sample GSM1500989 Query DataSets for GSM1500989
Status Public on Nov 03, 2014
Title genomic DNA from human muscle of subject S11a14992
Sample type genomic
Source name Muscle
Organism Homo sapiens
Characteristics subjectid: S11a14992
Sex: female
dna.extraction.method: AllPrep
age: 46
dnamage: 53.24260661
ageaccelerationresidual: 6.92505925661857
bmi: 36.9
diseasestatus: NAFLD
nafldactivityscore: 2
liversteatosis: 2
liverinflammation: 0
fibrosis: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human muscle tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61259 Human muscle Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2818293
cg00000108 0.8801588
cg00000109 0.5707586
cg00000165 0.1768646
cg00000236 0.5783482
cg00000289 0.4352458
cg00000292 0.4543043
cg00000321 0.2411521
cg00000363 0.2599983
cg00000622 0.02934561
cg00000658 0.7843258
cg00000714 0.09784614
cg00000721 0.8680071
cg00000734 0.07134365
cg00000769 0.04353859
cg00000807 0.6297346
cg00000884 0.667681
cg00000905 0.07505115
cg00000924 0.4993517
cg00000948 0.8610342

Total number of rows: 485577

Table truncated, full table size 10046 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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