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Sample GSM1500986 Query DataSets for GSM1500986
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a17b32
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a17b32
Sex: male
dna.extraction.method: AllPrep
age: 54
dnamage: 54.166727
ageaccelerationresidualbasedontrainingandtestdata: 1.255968228
bmi: 30.4
diseasestatus: PSC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: NA
nas.ballooning: NA
dnamageadjustedagebmi: 2.097746056
dnamageadjustedagebmigender: -0.16304892
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3111605
cg00000108 0.4470336
cg00000109 0.8842813
cg00000165 0.180569
cg00000236 0.7981887
cg00000289 0.6557211
cg00000292 0.6404173
cg00000321 0.2191873
cg00000363 0.6346546
cg00000622 0.01502599
cg00000658 0.7710988
cg00000714 0.1989723
cg00000721 0.8965539
cg00000734 0.06477033
cg00000769 0.08005945
cg00000807 0.7250595
cg00000884 0.8515769
cg00000905 0.08106808
cg00000924 0.4373575
cg00000948 0.8420628

Total number of rows: 485577

Table truncated, full table size 10036 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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