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Sample GSM1500985 Query DataSets for GSM1500985
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a17b22
Sample type genomic
 
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a17b22
Sex: male
dna.extraction.method: AllPrep
age: 60
dnamage: 70.24144255
ageaccelerationresidualbasedontrainingandtestdata: 13.96678361
bmi: 22
diseasestatus: PSC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: NA
nas.ballooning: NA
dnamageadjustedagebmi: 15.80350466
dnamageadjustedagebmigender: 13.55340751
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
 
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
ID_REF
VALUE Average Beta (no special processing)

Data table
ID_REF VALUE
cg00000029 0.380883
cg00000108 0.5676717
cg00000109 0.8622313
cg00000165 0.2116878
cg00000236 0.8118096
cg00000289 0.8258267
cg00000292 0.69992
cg00000321 0.2548908
cg00000363 0.6660728
cg00000622 0.01810886
cg00000658 0.7633947
cg00000714 0.1932775
cg00000721 0.8953645
cg00000734 0.06706882
cg00000769 0.07992073
cg00000807 0.7118351
cg00000884 0.8314385
cg00000905 0.06685194
cg00000924 0.5129418
cg00000948 0.8779396

Total number of rows: 485577

Table truncated, full table size 10035 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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