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Sample GSM1500984 Query DataSets for GSM1500984
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a17b12
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a17b12
Sex: female
dna.extraction.method: AllPrep
age: 53
dnamage: 53.14443327
ageaccelerationresidualbasedontrainingandtestdata: 0.794324525
bmi: 23.2
diseasestatus: PSC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: NA
nas.ballooning: NA
dnamageadjustedagebmi: 2.914135926
dnamageadjustedagebmigender: 4.681410687
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3280754
cg00000108 0.453584
cg00000109 0.8247536
cg00000165 0.1963449
cg00000236 0.8285213
cg00000289 0.5797229
cg00000292 0.6946227
cg00000321 0.1988261
cg00000363 0.6793837
cg00000622 0.01254362
cg00000658 0.7489324
cg00000714 0.1699464
cg00000721 0.9091105
cg00000734 0.06354282
cg00000769 0.07620876
cg00000807 0.7082512
cg00000884 0.788022
cg00000905 0.09808201
cg00000924 0.5358155
cg00000948 0.8493348

Total number of rows: 485577

Table truncated, full table size 10036 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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