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Sample GSM1500983 Query DataSets for GSM1500983
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a17b02
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a17b02
Sex: female
dna.extraction.method: AllPrep
age: 46
dnamage: 43.40480658
ageaccelerationresidualbasedontrainingandtestdata: -5.020751973
bmi: 24.4
diseasestatus: PSC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: NA
nas.ballooning: NA
dnamageadjustedagebmi: -2.617850225
dnamageadjustedagebmigender: -0.866555133
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3695259
cg00000108 0.4037993
cg00000109 0.8709708
cg00000165 0.174193
cg00000236 0.8130669
cg00000289 0.6562401
cg00000292 0.6596273
cg00000321 0.2117168
cg00000363 0.6955658
cg00000622 0.01315683
cg00000658 0.7476068
cg00000714 0.1389947
cg00000721 0.9001847
cg00000734 0.06444991
cg00000769 0.0812724
cg00000807 0.700102
cg00000884 0.8176175
cg00000905 0.08071865
cg00000924 0.4870513
cg00000948 0.8376731

Total number of rows: 485577

Table truncated, full table size 10041 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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