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Sample GSM1500981 Query DataSets for GSM1500981
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a17ae2
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a17ae2
Sex: male
dna.extraction.method: AllPrep
age: 37
dnamage: 44.03682541
ageaccelerationresidualbasedontrainingandtestdata: 0.657117106
bmi: 19.7
diseasestatus: PSC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: NA
nas.ballooning: NA
dnamageadjustedagebmi: 4.472107942
dnamageadjustedagebmigender: 2.166966277
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.4121456
cg00000108 0.390024
cg00000109 0.8571474
cg00000165 0.1501913
cg00000236 0.8099663
cg00000289 0.6511168
cg00000292 0.6281154
cg00000321 0.2130652
cg00000363 0.7037513
cg00000622 0.01824732
cg00000658 0.7642531
cg00000714 0.2007151
cg00000721 0.9110833
cg00000734 0.07307527
cg00000769 0.07391258
cg00000807 0.7169758
cg00000884 0.8418421
cg00000905 0.1065416
cg00000924 0.482727
cg00000948 0.8653682

Total number of rows: 485577

Table truncated, full table size 10034 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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