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Sample GSM1500980 Query DataSets for GSM1500980
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a17ab2
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a17ab2
Sex: male
dna.extraction.method: AllPrep
age: 55
dnamage: 58.51349484
ageaccelerationresidualbasedontrainingandtestdata: 5.042086035
bmi: 21.8
diseasestatus: PSC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: NA
nas.ballooning: NA
dnamageadjustedagebmi: 7.258498617
dnamageadjustedagebmigender: 4.996557318
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3599703
cg00000108 0.6011909
cg00000109 0.8628543
cg00000165 0.1992393
cg00000236 0.7713791
cg00000289 0.6351631
cg00000292 0.6190048
cg00000321 0.2621978
cg00000363 0.6153861
cg00000622 0.01627685
cg00000658 0.7785429
cg00000714 0.1761281
cg00000721 0.8865073
cg00000734 0.06512522
cg00000769 0.08539183
cg00000807 0.6687834
cg00000884 0.8423566
cg00000905 0.07592702
cg00000924 0.5021001
cg00000948 0.8539482

Total number of rows: 485577

Table truncated, full table size 10028 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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