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Sample GSM1500979 Query DataSets for GSM1500979
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a17aa2
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a17aa2
Sex: female
dna.extraction.method: AllPrep
age: 61
dnamage: 56.13907469
ageaccelerationresidualbasedontrainingandtestdata: -0.696234285
bmi: 29.7
diseasestatus: PSC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: NA
nas.ballooning: NA
dnamageadjustedagebmi: -0.221492004
dnamageadjustedagebmigender: 1.567247697
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3051344
cg00000108 0.3734221
cg00000109 0.8358108
cg00000165 0.1584656
cg00000236 0.8029545
cg00000289 0.6848582
cg00000292 0.6749893
cg00000321 0.2349852
cg00000363 0.7178526
cg00000622 0.01088256
cg00000658 0.7782232
cg00000714 0.180325
cg00000721 0.9062881
cg00000734 0.06408715
cg00000769 0.07052489
cg00000807 0.7121319
cg00000884 0.8310098
cg00000905 0.0897879
cg00000924 0.4932638
cg00000948 0.8498704

Total number of rows: 485577

Table truncated, full table size 10037 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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