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Sample GSM1500978 Query DataSets for GSM1500978
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a17a92
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a17a92
Sex: male
dna.extraction.method: AllPrep
age: 57
dnamage: 57.28594708
ageaccelerationresidualbasedontrainingandtestdata: 2.693238218
bmi: 26.2
diseasestatus: PSC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: NA
nas.ballooning: NA
dnamageadjustedagebmi: 4.032487659
dnamageadjustedagebmigender: 1.777041593
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3631704
cg00000108 0.5984871
cg00000109 0.8506669
cg00000165 0.1876508
cg00000236 0.7956116
cg00000289 0.6161247
cg00000292 0.6625327
cg00000321 0.2755018
cg00000363 0.5480574
cg00000622 0.008142291
cg00000658 0.7741743
cg00000714 0.167921
cg00000721 0.9023247
cg00000734 0.08169719
cg00000769 0.07159337
cg00000807 0.650301
cg00000884 0.8439197
cg00000905 0.05987848
cg00000924 0.4773667
cg00000948 0.8523968

Total number of rows: 485577

Table truncated, full table size 10040 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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