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Sample GSM1500977 Query DataSets for GSM1500977
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a17a82
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a17a82
Sex: male
dna.extraction.method: AllPrep
age: 38
dnamage: 46.76108204
ageaccelerationresidualbasedontrainingandtestdata: 2.820723716
bmi: 23
diseasestatus: PSC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: NA
nas.ballooning: NA
dnamageadjustedagebmi: 6.012453541
dnamageadjustedagebmigender: 3.711007024
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.4032664
cg00000108 0.5735741
cg00000109 0.8779597
cg00000165 0.2036105
cg00000236 0.8022858
cg00000289 0.6365805
cg00000292 0.7061288
cg00000321 0.2547676
cg00000363 0.6880767
cg00000622 0.01674566
cg00000658 0.7898613
cg00000714 0.1802085
cg00000721 0.8864472
cg00000734 0.07109349
cg00000769 0.07045218
cg00000807 0.7061431
cg00000884 0.8502364
cg00000905 0.05967054
cg00000924 0.5112743
cg00000948 0.8699704

Total number of rows: 485577

Table truncated, full table size 10039 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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