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Sample GSM1500976 Query DataSets for GSM1500976
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a17a72
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a17a72
Sex: female
dna.extraction.method: AllPrep
age: 52
dnamage: 53.78872819
ageaccelerationresidualbasedontrainingandtestdata: 1.999269475
bmi: 23.2
diseasestatus: PSC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: NA
nas.ballooning: NA
dnamageadjustedagebmi: 4.188303565
dnamageadjustedagebmigender: 5.953225772
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.343161
cg00000108 0.5047768
cg00000109 0.8543749
cg00000165 0.1992513
cg00000236 0.8297828
cg00000289 0.5937237
cg00000292 0.6472727
cg00000321 0.2593958
cg00000363 0.6285993
cg00000622 0.02356481
cg00000658 0.7558796
cg00000714 0.1811673
cg00000721 0.8906052
cg00000734 0.0725784
cg00000769 0.07219666
cg00000807 0.7005386
cg00000884 0.8296519
cg00000905 0.07525363
cg00000924 0.5094333
cg00000948 0.8471433

Total number of rows: 485577

Table truncated, full table size 10034 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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