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Sample GSM1500975 Query DataSets for GSM1500975
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a17a62
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a17a62
Sex: male
dna.extraction.method: AllPrep
age: 23
dnamage: 25.27264411
ageaccelerationresidualbasedontrainingandtestdata: -10.2579638
bmi: 24.8
diseasestatus: PSC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: NA
nas.ballooning: NA
dnamageadjustedagebmi: -6.330096353
dnamageadjustedagebmigender: -8.666098872
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3292573
cg00000108 0.3997188
cg00000109 0.9095162
cg00000165 0.1537841
cg00000236 0.8271909
cg00000289 0.7637407
cg00000292 0.6816663
cg00000321 0.1861311
cg00000363 0.7439684
cg00000622 0.02129955
cg00000658 0.7692181
cg00000714 0.2004584
cg00000721 0.9148715
cg00000734 0.07057076
cg00000769 0.07461777
cg00000807 0.736138
cg00000884 0.8263664
cg00000905 0.08052744
cg00000924 0.5109105
cg00000948 0.8510719

Total number of rows: 485577

Table truncated, full table size 10048 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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