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Sample GSM1500974 Query DataSets for GSM1500974
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a17952
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a17952
Sex: male
dna.extraction.method: AllPrep
age: 60
dnamage: 60.6524368
ageaccelerationresidualbasedontrainingandtestdata: 4.377777857
bmi: 57.3
diseasestatus: NASH
nafldactivityscore: 5
liversteatosis: 3
liverinflammation: 1
fibrosis: 1
nas.ballooning: 1
dnamageadjustedagebmi: 0.287967777
dnamageadjustedagebmigender: -1.947767708
smokingstatus: no
smokingpackyears: 1
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3398173
cg00000108 0.4520046
cg00000109 0.8340521
cg00000165 0.1714522
cg00000236 0.8217745
cg00000289 0.6411042
cg00000292 0.6924494
cg00000321 0.2486133
cg00000363 0.6463711
cg00000622 0.01699309
cg00000658 0.7729052
cg00000714 0.1562799
cg00000721 0.8882381
cg00000734 0.06800643
cg00000769 0.07699697
cg00000807 0.6746147
cg00000884 0.8588398
cg00000905 0.06333444
cg00000924 0.5019521
cg00000948 0.8508466

Total number of rows: 485577

Table truncated, full table size 10041 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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